AG
ReadyAntimicrobial-resistance genomic surveillance
A completed provenance-first study of antimicrobial-resistance marker detection, assembly quality, genomic relatedness, and metadata-aware surveillance evidence.
- Python
- Biopython
- NCBI AMRFinderPlus 4.2.7
- Pandas
- Matplotlib
- Jupyter
- Project ID
- GP-BT-1EKR0B9
- Domain
- Biotechnology
- Complexity
- Advanced
- Catalogued
- 21 Aug 2026
- Licence
- Single buyer
- Repository
- Private handover
- Buyer record
- Never public
Included in the project
- Complete AMR genomic-surveillance Python workflow
- Twenty-four controlled reduced teaching assemblies from eight planted lineages
- Raw NCBI AMRFinderPlus results under three threshold configurations
- Assembly QC, AMR-profile, genomic-relatedness, and metadata result tables
- Nine generated result figures and three attributed literature figures
- Offline evidence dashboard
- Seventy-one automated tests with 99.31 percent statement coverage
- Complete project files, calculations, results, and analysis material in a private GitHub repository
- 76-page project documentation in PDF and editable Word formats
- 17-page setup and usage guide in PDF and editable Word formats
- Fifty annotated references